PoInTree: A Polar and Interactive Phylogenetic Tree

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摘要 PoInTree(PolarandInnteractiveTree)isanapplicationthatallowstobuild,visualize,andcustomizephylogenetictreesinapolar,interactive,andhighlyflexibleview.IttakesasinputaFASTAfileormultiplealignmentformats.PhylogenetictreecalculationisbasedonasequencedistancemethodandutilizestheNeighborJoining(NJ)algorithm.ItalsoallowsdisplayingprecalculatedtreesofthemajorproteinfamiliesbasedonPfamclassification.InPoInTree,nodescanbedynamicallyopenedandclosedanddistancesbetweengenesaregraphicallyrepresented.Treerootcanbecenteredonaselectedleaf.Textsearchmechanism,color-codingandlabelingdisplayareintegrated.ThevisualizercanbeconnectedtoanOracledatabasecontaininginformationonsequencesandotherbiologicaldata,helpingtoguidetheirinterpretationwithinagivenproteinfamilyacrossmultiplespecies.TheapplicationiswritteninBorlandDelphiandbasedonVCLTeechartPro6graphicalcomponent(Steemasoftware).
机构地区 不详
出版日期 2005年01月11日(中国期刊网平台首次上网日期,不代表论文的发表时间)
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