Comparative Analysis of Splice Site Regions by Information Content

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摘要 Wehaveappliedconceptsfrominformationtheoryforacomparativeanalysisofdonor(gt)andacceptor(ag)splicesiteregionsinthegenesoffivedifferentor-ganismsbycalculatingtheirmutualinformationcontent(relativeentropy)overaselectedblockofnucleotides.Asimilarpatternthattheinformationcontentdecreasesastheblocksizeincreaseswasobservedforbothregionsinalltheorgan-ismsstudied.Thisresultsuggeststhattheinformationrequiredforsplicingmightbecontainedintheconsensusof~6-8ntatbothregions.Weassumefromourstudythateventhoughthenucleotidesareshowingsomedegreesofconservationintheflankingregionsofthesplicesites,certainlevelofvariabilityisstilltolerated,whichleadsthesplicingprocesstooccurnormallyeveniftheextentofbasepairingisnotfullysatisfied.Wealsosuggestthatthisvariabilitycanbecompensatedbyrecognizingdifferentsplicesiteswithdifferentspliceosomalfactors.
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出版日期 2006年04月14日(中国期刊网平台首次上网日期,不代表论文的发表时间)
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