Sorting by Restricted-Length-Weighted Reversals

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摘要 Classicalsortingbyreversalsusestheunit-costmodel,thatis,eachreversalconsumesanequalcost.Thismodellimitsthebiologicalmeaningofsortingbyreversal.Benderandhiscolleaguesextendeditbyassigningacostfunctionf(l)=lαforallα≥0,wherelisthelengthofthereversedsubsequence.Inthispaper,weextendtheirresultsbyconsideringamodelinwhichlongreversalsareprohibited.Usingthesamecostfunctionaboveforpermittedreversals,wepresenttightornearlytightboundsfortheworst-casecostofsortingbyreversals.Thenwedevelopalgorithmstoapproximatetheoptimalcosttosortagiven0/1sequenceaswellasagivenpermutation.OurproposedproblemsaremorebiologicallymeaningfulandmorealgorithmicallygeneralandchallengingthantheproblemconsideredbyBenderetal.Furthermore,ourboundsaretightandnearlytight,whereasouralgorithmsprovidegoodapproximationratioscomparedtotheoptimalcosttosort0/1sequencesorpermutationsbyreversals.
机构地区 不详
出版日期 2005年02月12日(中国期刊网平台首次上网日期,不代表论文的发表时间)
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